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NOBLE-Neural Operator with Biologically-informed Latent Embeddings to Capture Experimental Variability in Biological Neuron Models

Neural Information Processing Systems

Characterizing the cellular properties of neurons is fundamental to understanding their function in the brain. In this quest, the generation of bio-realistic models is central towards integrating multimodal cellular data sets and establishing causal relationships. However, current modeling approaches remain constrained by the limited availability and intrinsic variability of experimental neuronal data. The deterministic formalism of bio-realistic models currently precludes accounting for the natural variability observed experimentally. While deep learning is becoming increasingly relevant in this space, it fails to capture the full biophysical complexity of neurons, their nonlinear voltage dynamics, and variability.


Identifying multi-compartment Hodgkin-Huxley models with high-density extracellular voltage recordings

Neural Information Processing Systems

Multi-compartment Hodgkin-Huxley models are biophysical models of how electrical signals propagate throughout a neuron, and they form the basis of our knowledge of neural computation at the cellular level. However, these models have many free parameters that must be estimated for each cell, and existing fitting methods rely on intracellular voltage measurements that are highly challenging to obtain in vivo. Recent advances in neural recording technology with high-density probes and arrays enable dense sampling of extracellular voltage from many sites surrounding a neuron, allowing indirect measurement of many compartments of a cell simultaneously. Here, we propose a method for inferring the underlying membrane voltage, biophysical parameters, and the neuron's position relative to the probe, using extracellular measurements alone. We use an Extended Kalman Filter to infer membrane voltage and channel states using efficient, differentiable simulators. Then, we learn the model parameters by maximizing the marginal likelihood using gradient-based methods. We demonstrate the performance of this approach using simulated data and real neuron morphologies.




Equivalence of approximation by networks of single- and multi-spike neurons

arXiv.org Machine Learning

In a spiking neural network, is it enough for each neuron to spike at most once? In recent work, approximation bounds for spiking neural networks have been derived, quantifying how well they can fit target functions. However, these results are only valid for neurons that spike at most once, which is commonly thought to be a strong limitation. Here, we show that the opposite is true for a large class of spiking neuron models, including the commonly used leaky integrate-and-fire model with subtractive reset: for every approximation bound that is valid for a set of multi-spike neural networks, there is an equivalent set of single-spike neural networks with only linearly more neurons (in the maximum number of spikes) for which the bound holds. The same is true for the reverse direction too, showing that regarding their approximation capabilities in general machine learning tasks, single-spike and multi-spike neural networks are equivalent. Consequently, many approximation results in the literature for single-spike neural networks also hold for the multi-spike case.




Delays in Spiking Neural Networks: A State Space Model Approach

arXiv.org Artificial Intelligence

Spiking neural networks (SNNs) are biologically inspired, event-driven models that are suitable for processing temporal data and offer energy-efficient computation when implemented on neuromorphic hardware. In SNNs, richer neuronal dynamic allows capturing more complex temporal dependencies, with delays playing a crucial role by allowing past inputs to directly influence present spiking behavior. We propose a general framework for incorporating delays into SNNs through additional state variables. The proposed mechanism enables each neuron to access a finite temporal input history. The framework is agnostic to neuron models and hence can be seamlessly integrated into standard spiking neuron models such as LIF and adLIF. We analyze how the duration of the delays and the learnable parameters associated with them affect the performance. We investigate the trade-offs in the network architecture due to additional state variables introduced by the delay mechanism. Experiments on the Spiking Heidelberg Digits (SHD) dataset show that the proposed mechanism matches the performance of existing delay-based SNNs while remaining computationally efficient. Moreover, the results illustrate that the incorporation of delays may substantially improve performance in smaller networks.